Author Simianer, Henner
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2024 | Journal Article
Genomic evidence for the suitability of Göttingen Minipigs with a rare seizure phenotype as a model for human epilepsy
Najafi, P.; Reimer, C.; Gilthorpe, J. D.; Jacobsen, K. R.; Ramløse, M.; Paul, N.-F. & Simianer, H. et al. (2024)
neurogenetics,. DOI: https://doi.org/10.1007/s10048-024-00750-2
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2023 | Journal Article
Genomic prediction using information across years with epistatic models and dimension reduction via haplotype blocks
Vojgani, E.; Hölker, A. C.; Mayer, M.; Schön, C.-C.; Simianer, H. & Pook, T. (2023)
PLoS One, 18(3) art. e0282288. DOI: https://doi.org/10.1371/journal.pone.0282288
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2023 | Journal Article
Optimization of breeding program design through stochastic simulation with kernel regression
Hassanpour, A.; Geibel, J.; Simianer, H. & Pook, T. (2023)
G3: Genes, Genomes, Genetics, art. jkad217. DOI: https://doi.org/10.1093/g3journal/jkad217
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2022 | Journal Article | Research Paper
Assessment of linkage disequilibrium patterns between structural variants and single nucleotide polymorphisms in three commercial chicken populations
Geibel, J.; Praefke, N. P.; Weigend, S.; Simianer, H. & Reimer, C. (2022)
BMC Genomics, 23(1) art. 193. DOI: https://doi.org/10.1186/s12864-022-08418-7
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2022 | Journal Article
Ghat: An R package for identifying adaptive polygenic traits
Mahmoud, M.; Tost, M.; Ha, N.-T.; Simianer, H. & Beissinger, T. (2022)
G3 Genes|Genomes|Genetics, art. jkac319. DOI: https://doi.org/10.1093/g3journal/jkac319
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2021 | Journal Article | Research Paper |
How imputation can mitigate SNP ascertainment Bias
Geibel, J.; Reimer, C.; Pook, T.; Weigend, S.; Weigend, A. & Simianer, H. (2021)
BMC Genomics, 22(1) art. 340. DOI: https://doi.org/10.1186/s12864-021-07663-6
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2021 | Journal Article | Research Paper |
Genetic diversity in global chicken breeds in relation to their genetic distances to wild populations
Malomane, D. K.; Weigend, S.; Schmitt, A. O.; Weigend, A.; Reimer, C. & Simianer, H. (2021)
Genetics Selection Evolution, 53(1) art. 36. DOI: https://doi.org/10.1186/s12711-021-00628-z
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2021 | Journal Article
COVID-19: a “black swan” and what animal breeding can learn from it
Simianer, H. & Reimer, C. (2021)
Animal Frontiers, 11(1) pp. 57-59. DOI: https://doi.org/10.1093/af/vfaa046
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2021 | Book Chapter
Phenotype Prediction Under Epistasis
Vojgani, E.; Pook, T.& Simianer, H. (2021)
In:Wong, Ka-Chun (Ed.), Methods in Molecular Biology Epistasis : Methods and Protocols pp. 105-120. New York, NY: Springer US. DOI: https://doi.org/10.1007/978-1-0716-0947-7_8
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2021 | Journal Article | Research Paper |
How array design creates SNP ascertainment bias
Geibel, J.; Reimer, C.; Weigend, S.; Weigend, A.; Pook, T. & Simianer, H. (2021)
PLoS One, 16(3) pp. e0245178. DOI: https://doi.org/10.1371/journal.pone.0245178
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2021 | Journal Article |
Accounting for epistasis improves genomic prediction of phenotypes with univariate and bivariate models across environments
Vojgani, E.; Pook, T.; Martini, J. W. R.; Hölker, A. C.; Mayer, M.; Schön, C.-C. & Simianer, H. (2021)
Theoretical and Applied Genetics,. DOI: https://doi.org/10.1007/s00122-021-03868-1
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2021 | Journal Article | Research Paper |
MoBPSweb: A web-based framework to simulate and compare breeding programs
Pook, T.; Büttgen, L.; Ganesan, A.; Ha, N.-T. & Simianer, H. (2021)
G3 Genes|Genomes|Genetics, 11(2). DOI: https://doi.org/10.1093/g3journal/jkab023
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2021 | Journal Article | Research Paper |
Prediction of Maize Phenotypic Traits With Genomic and Environmental Predictors Using Gradient Boosting Frameworks
Westhues, C. C.; Mahone, G. S.; da Silva, S.; Thorwarth, P.; Schmidt, M.; Richter, J.-C. & Simianer, H. et al. (2021)
Frontiers in Plant Science, 12. DOI: https://doi.org/10.3389/fpls.2021.699589
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2021 | Journal Article |
Increasing calling accuracy, coverage, and read-depth in sequence data by the use of haplotype blocks
Pook, T.; Nemri, A.; Gonzalez Segovia, E. G.; Valle Torres, D.; Simianer, H. & Schoen, C.-C. (2021)
PLOS Genetics, 17(12) pp. e1009944. DOI: https://doi.org/10.1371/journal.pgen.1009944
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2020 | Journal Article | Research Paper |
Genome-wide detection of signatures of selection in indicine and Brazilian locally adapted taurine cattle breeds using whole-genome re-sequencing data
Peripolli, E.; Reimer, C.; Ha, N.-T.; Geibel, J. ; Machado, M. A.; Panetto, J. C. do C. & do Egito, A. A. et al. (2020)
BMC Genomics, 21(1) art. 624. DOI: https://doi.org/10.1186/s12864-020-07035-6
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2020 | Preprint
How Array Design affects SNP Ascertainment Bias
Geibel, J.; Reimer, C.; Weigend, S.; Weigend, A.; Pook, T.& Simianer, H. (2020). DOI: https://doi.org/10.1101/833541
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2020 | Journal Article | Research Paper |
Simulation Study on the Integration of Health Traits in Horse Breeding Programs
Büttgen, L.; Geibel, J. ; Simianer, H. & Pook, T. (2020)
Animals, 10(7) pp. 1153. DOI: https://doi.org/10.3390/ani10071153
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2020 | Journal Article
Genetic viability of a reintroduced population of south-western common brushtail possum (Trichosurus vulpecula hypoleucus), Western Australia
Semple, L.; Ottewell, K.; Sims, C.; Simianer, H. & Byrne, M. (2020)
Pacific Conservation Biology, 26(3) pp. 282. DOI: https://doi.org/10.1071/PC19031
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2019 | Journal Article |
Efficient phenotypic sex classification of zebrafish using machine learning methods
Hosseini, S.; Simianer, H.; Tetens, J.; Brenig, B.; Herzog, S. & Sharifi, A. R. (2019)
Ecology and Evolution, 9(23) pp. 13332-13343. DOI: https://doi.org/10.1002/ece3.5788
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